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The buzz in the pantry

Posted on 2016-05-172023-01-06 by Allison J. Gong

I suspect that, for most people, opening the pantry and hearing the buzz of bees would be an alarming thing. For us, though, it’s just a reminder to see if the queen wants any food.

Why, you may well ask, do we have bees in the pantry? Because this year we have a few hives that are more aggressive than we’d like. This queen came from our Green hive, which we thought early in the spring had gone queenless. They were pissy at the time, which is the norm for hives that are not queen-right. We weren’t certain that the Green workers would be able to build themselves a new queen but when, after waiting three anxious weeks, we saw new brood in the hive we sighed in relief.

This new queen, however, happens to produce rather bitchy daughters. This has to do with her own genetics as well as those of the drones she mated with. The workers in this hive aren’t really mean, but are more easily riled up and less forgiving than we like to deal with. Fortunately there’s an easy solution to this problem: Re-queen the hive. More on that below.

This is a queen cage:

Bees in queen cage. 17 May 2016 © Allison J. Gong
Bees in queen cage.
17 May 2016
© Allison J. Gong

Queen cages come in a variety of forms but they are essentially all the same: A cylinder that has an openable hatch on one end and some mesh on the sides. The idea is that you put a queen inside the cage with some accompanying attendants. The mesh allows for air circulation, and you can offer food and honey to the attendants who will in turn feed it to the queen. There’s a smear of honey on the mesh in the photo above; I fed and watered the bees when I got home this afternoon.

Now, about re-queening a hive. The first step is to locate and remove the existing queen. If the hive is “boiling over with bees,” as one of our beekeeping mentors likes to say, then it can be a tough job. The queen is captured and placed into the cage with 4-5 attendants who will care for her for several days. Then you can place the new queen, hopefully of a more pleasant disposition, in her cage in the hive. Wait at least three days for the bees to get used to her scent–they’ll kill her as an intruder if you don’t–then open up the cage and let her go into the bowels of the hive. At this point the worst thing that can happen is that she decides to fly. This hasn’t happened to us (yet) but it has to one of our mentors, who admits that he should have known better than to show off by opening the queen cage outside the front door of the hive, only to watch her take off into the air and never come back.

The former queen of our Green hive (the one who has temporary residence in our pantry) will go to a friend of ours who likes bitchy bees. Tomorrow we’ll introduce Green’s new queen, a Taber Italian, to the workers in the hive. After a few days to let the new queen’s pheromones circulate throughout the colony, we’ll release the queen into the and she’ll start laying. Within a month or so, the temperament of the entire hive should have changed from moderately pissy to sweet and gentle.

Re-queening a hive can solve problems of overly defensive bees. Some beekeepers don’t tolerate any hint of unpleasantness in their bees and will remove any queen whose daughters aren’t easy to work with. I’m leaning in that direction, too. Having been chased by an overly competent guard bee and gotten a bad sting the second summer we had bees, I am more nervous around some of our colonies than I should be. In addition to making our hives easier to deal with, selecting for gentleness would also spread this desirable trait throughout feral colonies in the area. Sweet bees FTW!

In the meantime, until we can get our old queen to our friend, Ian, she and her attendant daughters are living in the pantry. The pantry is a dark place (remember, there’s no light inside a bee colony, so they are most comfortable in darkness) where the temperature remains fairly consistent. Plus, the nosy cats can’t get to the bees if I close them in the pantry. I have to admit that it’s a little startling to open the pantry door and be greeted by a loud buzz. But better us than just about anyone else, right?

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How can you eat sand?

Posted on 2016-05-132023-01-06 by Allison J. Gong

Well, we can’t—at least, not very well. I suppose we can eat it in small amounts, but sand itself is one of the most nutrient-poor substances imaginable. Sand is, after all, ground up bits of rock. It would provide certain minerals, depending on the type of rock, but none of the essential macronutrients—carbohydrates, proteins, and lipids—that animals need to survive.

When I was a kid I thought that sand dollars were called sand dollars because I’d find their broken tests on sandy beaches. I knew they lived in sand, hence the name. As I started studying marine invertebrates in college I learned that sand dollars don’t just live in the sand; they also eat sand. In addition to organic matter, usually in the form of detritus, sand dollars eat sand to create ballast. This makes them heavy and keeps them from being picked up and carried away by waves. It is also why, if you come across an intact sand dollars test and break it open, sand will fall out of it.

I have a batch of recently settled Dendraster excentricus, the common sand dollar in northern California. They began metamorphosing only 30 days post-fertilization. As the larvae settled and transformed into tiny sand dollars, I decided to try to figure out what to feed them. These animals aren’t grown commercially and there doesn’t seem to be a definitive answer on how to raise them. One of the suggestions I got was “Well, we know they eat sand, so feed them sand.”

Which is what I did. The first time I just sprinkled a bit of sand in the dish with the juvenile sand dollars. Then I looked under the microscope to see that the sand grains were about 10 times the size of the animals. Oops. But the sand dollars didn’t look unhappy so I let them be. I decided that they also needed something organic to eat so I ground up a small piece of Ulva and dropped some of the resulting slurry on them.

The second time I offered sand to the sand dollars I ground it up in a mortar and pestle that I scrounged from the lab next door. Let me tell you, grinding sand makes a sound that is every bit as horrible as you imagine. At least it produced smaller particles that the sand dollars might be able to eat. I continued to offer Ulva mush in addition to the fine sand. If they end up eating either sand or Ulva, I can provide that pretty easily. The question is, how do I know whether or not they’re eating?

Juvenile sand dollars (Dendraster excentricus). 13 May 2016 © Allison J. Gong
Juvenile sand dollars (Dendraster excentricus).
13 May 2016
© Allison J. Gong

How many sand dollars can you find in the above photo? They are exactly the same color as the sand. I don’t have real proof that these little guys are eating sand; even their poops would look like the sand. The animals do tend to clear the space in their immediate vicinity, but I think that might be due to the action of the tube feet and spines rather than consumption of either sand or Ulva. In this video clip you will see that the sand dollars are very active, even though all the motion doesn’t seem directed the way it does in urchins at this stage.

They do a lot of waving around, but don’t actually walk. They do, however, seem to like being tilted up a bit, similar to the way adult sand dollars position themselves when in calm water:

By Chan siuman at English Wikipedia, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=23041434
By Chan siuman at English Wikipedia, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=23041434

I do have circumstantial evidence that my sand dollars are eating something. The first ones metamorphosed at 30 days post-fertilization. Today is day 51 post-fertilization, which means some of the animals have been post-larvae almost as long as they were larvae. I know it takes about a week for newly metamorphosed sea urchins to form their new guts and begin feeding, and I assume it’s the same for sand dollars. In fact, because these sand dollars raced through larval development so quickly I expected their juvenile mouths to break through quickly as well. If this were the case, then these animals should have had complete and functional guts for almost two weeks now. The fact that they’re not dead or dying makes me think that they have to be eating.

Call it a hunch, call it intuition, call it wishful thinking. I’m not sure how they’re doing it, but I think they’re fine. Next week I hope I can find time to measure them.

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Snapshots of Snapshot Day

Posted on 2016-05-082023-01-06 by Allison J. Gong

Since 2000 the first Saturday in May is Snapshot Day in Santa Cruz. This is a big event where the Coastal Watershed Council trains groups of citizen scientists to collect water quality data on the streams and rivers that drain into the Monterey Bay National Marine Sanctuary, then sets them loose with a bucket of gear, maps, and data sheets. The result is a “snapshot” of the health of the watershed. As we did last year, my students and I were among the volunteers who got to go out yesterday and play in coastal streams. This year there were 13 (+1) groups sent out to monitor ~40 sites within Santa Cruz County. For reasons I don’t entirely understand four sites in San Mateo County (the county to the north along the coast) were included in this year’s sampling scheme; hence the +1 designation. Since I routinely haunt the intertidal in this region I took the opportunity to become more familiar with the upstream parts of the county and volunteered to sample at these northern sites. It just so happened that I was teamed with two of my students, Eve and Belle, for yesterday’s activities.

Of our four sites, two were right on the beach and two were up in the mountains. Thus our “snapshots” covered both beach and redwood forest habitats. Here are Belle and Eve at our first site, Gazos Creek where it flows onto the beach:

Beel and Eve at Gazos Creek, our first site. 7 May 2016 © Allison J. Gong
Belle and Eve at Gazos Creek, our first site.
7 May 2016
© Allison J. Gong

After heavy rains the water draining through the watershed breaks through the sand bar and the creek flows into the ocean. Yesterday the sand bar was thick and impenetrable, at least to the measly amount of rain we’d had in the past 24 hours.

Gazos Creek as it flows onto the beach. After rains it breaks through the sand bar and flows into the ocean. 7 May 2016 © Allison J. Gong
Gazos Creek as it flows onto the beach. After rains it breaks through the sand bar and flows into the ocean.
7 May 2016
© Allison J. Gong

At each site we collected two water samples, for nutrient and bacteria analyses, and the following field measurements:

  • air and water temperature
  • electrical conductivity
  • pH
  • dissolved oxygen (DO)
  • water transparency
Snapshot Day data sheet for 7 May 2016 © Allison J. Gong
Snapshot Day data sheet for our Gazos Creek (forest) site.
7 May 2016
© Allison J. Gong

Here Eve is measuring conductivity in Gazos Creek (beach site):

Eve takes a conductivity measurement at Gazos Creek (beach site). 7 May 2016 © Allison J. Gong
Eve takes a conductivity measurement at Gazos Creek (beach site).
7 May 2016
© Allison J. Gong

Most of the equipment we used to take the field measurements was simple and straightforward: pH strips and a thermometer, for example. Even the conductivity meter was easy to use. You just turn it on, let the machine zero out, and stick it in the creek facing upstream so that water flows into the space between the electrodes. Here’s Belle taking a conductivity measurement at our Gazos Creek (forest) site:

Belle measures conductivity at our Gazos Creek (forest) site. 7 May 2016 © Allison J. Gong
Belle measures conductivity at our Gazos Creek (forest) site.
7 May 2016
© Allison J. Gong

The only tricky field measurement was the one for dissolved oxygen (DO). This involved collecting a water sample (easy enough), inserting an ampoule containing a reactive chemical into the sample tube, breaking off the tip of the ampoule so that water flows into the tube, and gently mixing the contents of the ampoule for two minutes. Then you compare the color of the ampoule with a set of standards in the kit to estimate the DO level in mg/L (=ppm).

Standards for measuring dissolved oxygen. 7 May 2016 © Allison J. Gong
Standards for measuring dissolved oxygen.
7 May 2016
© Allison J. Gong

Our second and third sites were up in the mountains, at Old Woman’s Creek and Gazos Creek (forest). With all the rain we had over the winter the riparian foliage has exploded into green. It was all absolutely lush and glorious. How lucky we were to spend the day in such surroundings!

Gazos Creek in the Santa Cruz Mountains. 7 May 2016 © Allison J. Gong
Gazos Creek in the Santa Cruz Mountains.
7 May 2016
© Allison J. Gong
Gazos Creek in the Santa Cruz Mountains. 7 May 2016 © Allison J. Gong
Gazos Creek in the Santa Cruz Mountains.
7 May 2016
© Allison J. Gong

And there were a great many banana slugs! All of them were solid yellow, with no brown spots. At one point there were so many slugs that we had to be extremely careful not to step on them.

Banana slug (Ariolimax sp.) in the Santa Cruz Mountains. 7 May 2016 © Allison J. Gong
Banana slug (Ariolimax sp.) in the Santa Cruz Mountains.
7 May 2016
© Allison J. Gong
Banana slug (Ariolimax sp.) in the Santa Cruz Mountains. 7 May 2016 © Allison J. Gong
Banana slug (Ariolimax sp.) in the Santa Cruz Mountains.
7 May 2016
© Allison J. Gong

Our fourth and final site was Whitehouse Creek, which flows into the Pacific Ocean to the south of Franklin Point. We had about a 10-minute hike to the creek from the road. By that point it had been raining for quite a while. Although we were protected from the rain by the trees when we were up in the forest, when we walked out to the field to the beach we were lucky it had eased to a light sprinkle.

Whitehouse Creek where it flows into the Pacific Ocean. 7 May 2016 © Allison J. Gong
Whitehouse Creek where it flows into the Pacific Ocean.
7 May 2016
© Allison J. Gong

After we finished our sampling we all agreed that we had to have gotten the most picturesque sites. None of the other teams got to visit both forest and beach for their sampling! We didn’t drop off our samples and equipment until 14:00, a couple of hours later than the other groups, but who would complain about having getting to spend the day tromping through the forest AND the beach?

Our feet! 7 May 2016 © Allison J. Gong
Our feet!
7 May 2016
© Allison J. Gong

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Not always a death sentence

Posted on 2016-05-052023-01-06 by Allison J. Gong

I’ve already written several times about seastar wasting syndrome (SSWS) and you’ve probably seen your share of photos of wasted, melting, self-mutilating stars. However, you may also be wondering about the current state of affairs regarding SSWS, and whether or not sea star populations have recovered at all since the outbreak began three years ago now. The question “How does SSWS affect the stars?” can be addressed on two different levels: the level of an individual star, and the level of the population of stars. In this post I discuss the first aspect, and in a subsequent post I’ll share my observations of sea star populations in the field.

Level 1: SSWS as it affects individual stars

I remember very vividly the feeling I had when I opened the door to the wet lab and glanced into my table to see this:

Large Patiria miniata (bat star) scavenging on dead Pisaster ochraceus (ochre star)
Large Patiria miniata (bat star) scavenging on dead Pisaster ochraceus (ochre star) in my seawater table at Long Marine Lab.
4 September 2013
© Allison J. Gong

And after that it only got worse, until (almost) every star was dead. It was interesting to watch how the disease manifests in different species of stars, though. The forcipulates–genera Pisaster (ochre stars), Pycnopodia (the huge sunflower star), Orthasterias (rainbow star)–succumbed quickly and violently. These were the animals that ripped their own arms off, often without showing any prior signs of distress, and then melted away.

Pisaster giganteus star melting from wasting disease. ©2013 Allison J. Gong
Pisaster giganteus star disintegrating due to wasting disease.
September 2013
©2013 Allison J. Gong

On the other hand, other species seemed to be more resistant to SSWS. At least, they didn’t succumb right away. Perhaps the disease (if it is indeed a disease) progresses more slowly in some groups of species compared to others. These stars, including the bat stars (Patiria miniata) and leather stars (Dermasterias imbricata), didn’t rip their arms off. The only leather star in my care died about a week after the forcipulates bit the dust, and the bat stars seemed fine for months. And when these species got sick they showed different symptoms.

Instead of self-mutilation, the leather and bat stars developed lesions on their skin. The lesions could be very deep, exposing the animal’s internal organs (guts and gonads) to the external environment.

Bat star (Patiria miniata) showing severe symptoms of wasting syndrome. 16 March 2015 © Allison J. Gong
Bat star (Patiria miniata) showing severe symptoms of wasting syndrome.
16 March 2015
© Allison J. Gong

The white objects inside the yellow circle are the star’s skeletal ossicles, which have fallen away because the tissue holding them in place has been severely eroded. I haven’t seen a leather star survive longer than a week once the lesions appear. Bat stars, on the other hand, can and do live for months with lesions. For example, this star of mine first developed lesions back in September 2015:

Patiria miniata (bat star) with small lesion. 4 September 2015 © Allison J. Gong
Patiria miniata (bat star) with small lesion.
4 September 2015
© Allison J. Gong

The lesions were small and superficial, and for a long time the animal didn’t actually seem sick. It wandered around its table, remained sticky, and even ate. Now, seven months later, the star is still hanging in there. I took this photo of it yesterday:

Bat star (Patiria miniata) with symptoms of SSWS. 4 May 2016 © Allison J. Gong
Bat star (Patiria miniata) with symptoms of SSWS.
4 May 2016
© Allison J. Gong

The lesion is bigger and deeper and now the innards are exposed. The star is also a little deflated, which might be a bad sign. From what I’ve observed, once an animal can no longer maintain its internal turgor pressure, it probably can’t recover. However, this one isn’t totally deflated yet, so I still have hope for it. Heck, this animal has been sick for over half a year now and hasn’t died yet. It obviously has some ability to resist the illness, or perhaps it’s just dying very slowly.

Just for kicks I zoomed in on the lesion under the dissecting scope, and it actually looks sort of cool. It isn’t every day that you can see the internal structures of an animal without cutting it open.

Lesion on aboral surface of Patiria miniata. 4 May 2016 © Allison J. Gong
Lesion on aboral surface of Patiria miniata.
4 May 2016
© Allison J. Gong

Sea stars don’t have a lot of space in the central disc of the body, so they keep their gonads and guts in their arms. Each arm contains a pair of pyloric caeca (extensions of the gut) and a pair of gonads. In the photo above, the whitish ribbons are the pyloric caeca and the tan bits are gonad. Just for kicks I snipped off a piece of the gonad and looked at it under the compound scope. And lo and behold, it’s a girl!

Female gonad of a wasting Patiria miniata. 4 May 2016 © Allison J. Gong
Female gonad of a wasting Patiria miniata.
4 May 2016
© Allison J. Gong

Those large round-ish blobs are oocytes in varying stages of maturity. I’m a little surprised to see any developing oocytes at all, given that this poor star has been sick for so long. Maybe this is a good sign. The internal fluid of the animal’s main body cavity is essentially seawater, so having the gonads and guts exposed to the outside might not be the direct avenue to infection that it would be for us. From what I can tell the tissue itself looks healthy: it doesn’t appear to be decomposing, the oocytes are full and more or less round, and there aren’t a lot of ciliates swarming all over it. So I think there’s hope for this animal, which has already survived so much, to pull through.


Another bat star that I’ve been keeping an eye on is a beautiful 8-armed star that was collected by Prof. John Pearse. Somehow I never managed to take a picture of this animal until it got sick about two weeks ago. One of the lab assistants noticed that it looked a little off on a Saturday, and two days later it had some nasty lesions.

8-armed Patiria miniata with lesions characteristic of SSWS. 23 April 2016 © Allison J. Gong
8-armed Patiria miniata with lesions characteristic of SSWS.
23 April 2016
© Allison J. Gong
Close-up of lesion on 8-armed P. miniata. 23 April 2016 © Allison J. Gong
Close-up of lesion on 8-armed P. miniata.
23 April 2016
© Allison J. Gong

Because this bat star went from zero symptoms to ulcerated lesions in two days, we didn’t think it would last much longer. The lab assistants isolated it in a tub filled with 0.2-µm filtered seawater and have been changing its water daily. Just as it didn’t take long for symptoms to appear, it didn’t take long for this individual to show signs of recovery. About five days after first being isolated the star was sticking to the side of its tub, indicating that its water vascular system was still functioning. A week after that, I looked at it again and saw that the lesions seemed to be healing!

8-armed P. miniata with healing aboral lesions. 4 May 2016 © Allison J. Gong
8-armed P. miniata with healing aboral lesions.
4 May 2016
© Allison J. Gong
Apparently healing lesion on 8-armed P. miniata. 4 May 2016 © Allison J. Gong
Close-up of apparently healing lesion on 8-armed P. miniata.
4 May 2016
© Allison J. Gong

The surface of the lesion appears to be more solid, as if the epidermis had been knitted back together. There’s still a bit of gonad exposed, though. Is this significant? At this point I’m not sure. The animal will remain in ICU, separated from all other echinoderms, until we are absolutely certain that it has recovered. And of course I may be jumping the gun to say that the animal is recovering at all. Only time will tell. It is, however, extremely refreshing even to think about SSWS without despair, for which I am grateful.

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LiMPETS (but not so many limpets)

Posted on 2016-04-292023-01-06 by Allison J. Gong

In recent years, citizen science has become a very important provider of biological data. This movement relies on the participation of people who have an interest in science but may not themselves be scientists. There is some training involved, as data must be collected in consistent ways if they are to be useful, but generally no scientific expertise is required. The beauty of citizen science is that it allows scientists and science educators to share the experience of discovery with people who might not otherwise know what it’s like to really examine the world around them. I think it is a great step towards creating a less science-phobic society, one in which science informs policy on scientific matters.

LiMPETS stands for “Long-term Monitoring Program and Experiential Training for Students.” The program seeks both to give students experience doing real science and to establish baseline and long-term ecological data for California’s sandy shores and rocky intertidal areas. As an intertidal ecologist myself, I naturally wanted my students to participate in the rocky intertidal monitoring.

The LiMPETS coordinator for Santa Cruz and Monterey Counties is a woman named Emily Gottlieb. She and I decided to have my class monitor the site at Davenport Landing. Emily came to class two weeks ago to train the students in identifying the relevant organisms and recording the data.

Practice tidepooling, training for real-life monitoring in the intertidal. 15 April 2016 © Allison J. Gong
Practice tidepooling, training for real-life monitoring in the intertidal.
15 April 2016
© Allison J. Gong

Tidepooling is easy and comfortable when you do it inside a classroom seated at a table. But today was all about the real thing. It was overcast and breezy when we met up with Emily at 09:30 and headed out to the site. At first the students seemed to be a little skeptical about the whole thing.

Students get their first look at their morning workplace. 29 April 2016 © Allison J. Gong
Students get their first look at their morning workplace.
29 April 2016
© Allison J. Gong

We were extremely fortunate to be joined this morning by Dr. John Pearse, Professor Emeritus of Biology at UC Santa Cruz, one of my graduate advisors, and the founder of LiMPETS. Dr. Pearse has been monitoring some sites, including this one at Davenport Landing, since the 1970s. He is THE person to talk to about intertidal changes in California over the past 40 years.

Years ago John set up permanent transect lines and plots at Davenport Landing, marking the origin of each transect with a bolt. The first thing we had to do when we got to the site was find the bolt. Then John ran out the transect line to the lowest point that students could work safely, given the conditions of tide and swell; this happened to be about 15 meters.

Dr. John Pearse runs out the vertical transect line. 29 April 2016 © Allison J. Gong
Dr. John Pearse runs out the vertical transect line.
29 April 2016
© Allison J. Gong

For the vertical transect, 1/2-meter square quadrats were placed at each meter. Some organisms were counted as individuals and others were marked as either present or absent in each of the 25 small squares within each quadrat. Emily gave the students their assignments and data sheets, and they spread out along the transect line.

Students working the vertical transect. 29 April 2016 © Allison J. Gong
Students working the vertical transect.
29 April 2016
© Allison J. Gong
LiMPETS sampling 29 April 2016 © Allison J. Gong
LiMPETS sampling
29 April 2016
© Allison J. Gong
LiMPETS sampling 29 April 2016 © Allison J. Gong
LiMPETS sampling
29 April 2016
© Allison J. Gong
LiMPETS sampling 29 April 2016 © Allison J. Gong
LiMPETS sampling
29 April 2016
© Allison J. Gong

Aside from the experience of learning how to do this kind of data collection, I hope the students understand what a privilege it is to have been in the field with John Pearse. He has such a thorough understanding of the intertidal that he is a treasure vault of knowledge. Here he is explaining what owl limpets are all about:

Dr. John Pearse explains what owl limpets are and how to find them. 29 April 2016 © Allison J. Gong
Dr. John Pearse explains what owl limpets are and how to find them.
29 April 2016
© Allison J. Gong

Interestingly, we didn’t find many owl limpets. And certainly not any of the big ones that I see all the time at Natural Bridges. John said that this is one of the differences between a protected area (Natural Bridges) and an unprotected one (Davenport Landing). Collecting is not allowed at Natural Bridges, and the owl limpets are left unmolested–by humans, at least–to grow large (10+ cm long is not uncommon). On the other hand, people do collect at Davenport and I’ve heard it said that owl limpets are good to eat; today we saw fewer than a dozen owl limpets and they were all small, none larger than 3 cm long.

The sun came out after a while, but the wind also picked up. The tide came up as well, and some of the students got more than a little wet. Overall they were real troopers, though, and I didn’t hear much complaining. Next week is the last lab of the semester, and we’ll be participating in another citizen science project. But that’s a tale for another day.

I did take advantage of the beautiful setting to have one of Emily’s LiMPETS volunteers (and a former student of mine!) take our class photo. Here we are, the Bio 11C class of 2016!

Class photo, taken at Davenport Landing. 29 April 2016 © Allison J. Gong
Class photo, taken at Davenport Landing.
29 April 2016
© Allison J. Gong

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The bloom is on

Posted on 2016-04-272023-01-06 by Allison J. Gong

This week it has been very windy on the coast. As in hope-the-next-gust-doesn’t-arrive-while-I-am-still-holding-onto-the-door windy. Seriously, the other day I almost wrenched my shoulder when the wind caught a door I was walking through just as I opened it. I should have braced myself before opening that door. The wind also blows around dust and pollen, exacerbating everybody’s spring allergies.

Despite all that, the wind is a good thing because it is the driving force behind coastal upwelling, the oceanographic phenomenon that brings cold, nutrient-rich water from depth to the surface. Upwelled water provides the nutrients that primary producers such as phytoplankton require for photosynthesis. The simple equation is: Sunlight + nutrients = photosynthesis. With the days getting longer as we head toward the summer solstice, this is the perfect time of year to be a phytoplankter. (Note: a phyto- or zooplankter is any creature that lives as plankton)

It takes several days of sustained winds from the north to start upwelling along the coast. I record the temperature in one of my seawater tables every day and keep an eye out for decreases that might indicate upwelling. Given that it’s been crazy windy since Sunday (today is Wednesday) I thought today would be a good day to collect a plankton sample and see what’s going on.

What did I find? Lots of phytoplankton, right on schedule!

Plankton sample collected from the Santa Cruz Municipal Wharf. 27 April 206 © Allison J. Gong
Plankton sample collected from the Santa Cruz Municipal Wharf.
27 April 206
© Allison J. Gong

Most of these critters are diatoms, of which there were several different types. Diatoms are unicellular algae whose cells are encased in a fancy silica shell called a frustule. More on that later. In Monterey Bay, the first phytoplankters to bloom in the spring are usually diatoms; they can take advantage of upwelled nutrients to fuel rapid asexual division so their populations grow quickly. Photosynthetic creatures from diatoms to redwood trees can perform the biochemical magic of capturing light energy and converting it to chemical energy held in molecules containing fixed carbon (e.g., glucose). Diatom blooms provide food for grazing zooplankters such as copepods and krill. These small animals become food for any number of larger animals, and so on up the food chain, so in every sense possible the phytoplankton are the foundation upon which the entire marine food web is based. Interested in saving the whales? Then you should focus your energies on saving the phytoplankton. Seriously.

The largest object in the photo above is a large protozoan ciliate called a tintinnid. They also live in glass shells, only theirs is called a lorica (L: “body armor”). The tintinnids I see most frequently in tows from the Wharf have a clear goblet-shaped lorica that is entirely transparent. These tintinnids are big, for single-celled creatures, up to over 1 mm in length. That’s a lot bigger than some multicellular animals!

Tintinnids are frantic little swimmers. They are heavily ciliated, which means they can swim really fast. The one in the photo was tangled up in the phytoplankton and squashed under a cover slip, which conveniently retarded its motion, but in this video you can see its little cilia beating. I added a few seconds of a different tintinnid swimming solo to the end of the video clip, which will give you a better idea of how they swim.


Here are some other plankters from today’s sample:

Photo #1 – Diatoms. The large cell with the spines on both ends is Ditylum brightwellii, one of my favorite scientific names. Chaetoceros cells each have long spines at the corners of the cells. The spines link adjacent cells together, forming chains.

The diatoms Ditylum brightwellii and Chaetoceros spp. from a plankton tow collected from the Santa Cruz Wharf. 27 April 2016 © Allison J. Gong
The diatoms Ditylum brightwellii and Chaetoceros spp. 
27 April 2016
© Allison J. Gong

Photo #2 – Chaetoceros. At least two species of diatoms in the species Chaetoceros.

Chaetoceros spp. 27 April 2016 © Allison J. Gong
Chaetoceros spp.
27 April 2016
© Allison J. Gong

Photo #3 – Chaetoceros debilis(?). This species forms spiral chains.

Chaetoceros debilis (I think). 27 April 2016 © Allison J. Gong
Chaetoceros debilis (I think).
27 April 2016
© Allison J. Gong

Photo #4 – Assorted phytoplankton. In this photo the five roundish cells are the dinoflagellate Protoperidinium. They have two flagella, one in a groove that wraps around the cell and one that trails free. The two button-like cells near the center of the picture are (I think) the diatom Thalassiosira. There are two chains of Chaetoceros debilis and several other chain diatoms. That big opaque vaguely bullet-shaped object to the right of center? That’s a fecal pellet, probably from a copepod.

Assorted phytoplankton from the Santa Cruz Wharf. 27 April 2016 © Allison J. Gong
Assorted phytoplankton from the Santa Cruz Wharf.
27 April 2016
© Allison J. Gong

Speaking of copepods, as usual they were very abundant, both as adults and as larvae. In terms of numbers of individuals, copepods are likely the most abundant animals in the sea. Copepods are small crustaceans that feed on phytoplankton and are in turn eaten by many larger animals. In life they have beautifully transparent bodies, allowing us to see the beating heart. See for yourself:

And, finally, about those diatom frustules. As I mentioned above, a diatom’s frustule is a sculpted shell made of silica (SiO2). It comes in two parts, an epitheca and a hypotheca, that fit together like the two halves of a petri dish. In fact, I use a petri dish as a frustule model for my marine biology students; it is made of roughly the same substance and demonstrates the size relationship between the epitheca and hypotheca.

The large round centric diatoms best show the structure of the frustule. Here’s the best photo I was able to take today of one of the very large centrics, Coscinodiscus:

The centric diatom Coscinodiscus sp. 27 April 2016 © Allison J. Gong
The centric diatom Coscinodiscus sp.
27 April 2016
© Allison J. Gong

I hope that later in the season I can take some better photos of these diatoms. They are so beautiful that I really to do them justice. So much diversity early in the season makes me hope for a good productive season. We’ll see!

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Seeing stars at Pigeon Point

Posted on 2016-04-242023-01-06 by Allison J. Gong

This morning I drove up the coast to Pigeon Point. It was cold and very windy, and I was grateful to have decided to wear all of my layers. I don’t remember any cold mornings from last year’s low tides, which made me think that perhaps we’re returning to a more normal non-El Niño weather pattern. The wind was screaming down the coast from the north, and if it keeps up we should get some upwelling in a few days. Fingers crossed!

Even the pelicans, which can fly through strong winter storms, were having a bit of trouble with the wind:

Pelicans in flight over turbulent seas at Pigeon Point. 24 April 2016 © Allison J. Gong
Pelicans in flight over turbulent seas at Pigeon Point.
24 April 2016
© Allison J. Gong

My favorite kelp grows in the intertidal, and it wasn’t having any difficulty at all with the strong surf. It’s not large and doesn’t form the magestic kelp forests that divers flock to, but it is very charming in its own way. The sea palm Postelsia palmaeformis is a small  (1/3-1/2 meter tall) kelp that lives only on exposed rocks sticking out into the brunt of the waves. It requires the full force of the crashing waves, where other algae would get broken off. They have a thick flexible stipe that bends with the waves and then pops back up. Postelsia is a protected organism and I can’t collect it even with my scientific collecting permit, which is fine with me.

Postelsia palmaeformis on exposed outer coast at Pigeon Point 24 April 2016 © Allison J. Gong
Postelsia palmaeformis on exposed outer coast at Pigeon Point
24 April 2016
© Allison J. Gong

This is the kind of environment in which Postelsia thrives:

You can tell how windy it was by the sound of the wind and my inability to hold the camera steady. As the tide comes in the pounding from the waves will only get worse. These little algae are pretty damn impressive!

Pigeon Point has always been a good place to see the 6-armed stars of the genus Leptasterias. Unlike the five arms that most of the local asteroids have, Leptasterias has six. And unfortunately for us naturalists, the taxonomy of the genus is incompletely understood. All that is agreed upon is that there are several species in the genus. This is referred to as a species complex, acknowledging that the genus contains more than one species but that the species have yet to be definitively described.

Leptasterias sp. at Pigeon Point. 24 April 2016 © Allison J. Gong
Leptasterias sp. at Pigeon Point.
24 April 2016
© Allison J. Gong
Leptasterias sp. at Pigeon Point. 24 April 2016 © Allison J. Gong
Leptasterias sp. at Pigeon Point.
24 April 2016
© Allison J. Gong
Leptasterias sp. at Pigeon Point. 24 April 2016 © Allison J. Gong
Leptasterias sp. at Pigeon Point.
24 April 2016
© Allison J. Gong
Leptasterias sp. at Pigeon Point. 24 April 2016 © Allison J. Gong
Leptasterias sp. at Pigeon Point.
24 April 2016
© Allison J. Gong

As you can see, these stars vary quite a bit in terms of arm thickness and color pattern. Most of the time they are blotchy but the blotches can be pink, gray, orange, or cream-colored. Some of the stars have slender arms with very little taper, while others have thicker arms that taper strongly to the tips. For the time being, until the sea star systematists come to consensus about the species in this genus, I’ll refer to all of them as Leptasterias sp.

Most of the Leptasterias that I see in the field are in the size range of 1-4 cm in diameter, usually no longer than my thumb. Today I saw a big one, which would have been about the size of the palm of my hand.

Leptasterias sp. at Pigeon Point. 24 April 2016 © Allison J. Gong
Leptasterias sp. at Pigeon Point.
24 April 2016
© Allison J. Gong

The reason this star doesn’t look quite as big as that in the above photo is that it was eating when I disturbed it. The star was humped up over its breakfast!

Leptasterias sp. at Pigeon Point 24 April 2016 © Allison J. Gong
Leptasterias sp. at Pigeon Point
24 April 2016
© Allison J. Gong

The unfortunate breakfast item, the turban snail Tegula funebralis, was about 2 cm in diameter. It seems like a very large and well-protected prey item for a star this size, doesn’t it? And yet, there it is. The animal is always right, and Leptasterias certainly knows what it should be eating.

And lastly, because they were just so beautiful and I can’t help myself, I’m going to close with photos of anemones.

Anthopleura sola at Pigeon Point 24 April 2016 © Allison J. Gong
Anthopleura sola at Pigeon Point, surrounded by encrusting and upright coralline algae
24 April 2016
© Allison J. Gong
Anthopleura xanthogrammica at Pigeon Point 24 April 2016 © Allison J. Gong
Anthopleura xanthogrammica at Pigeon Point
24 April 2016
© Allison J. Gong
Anthopleura sola at Pigeon Point 24 April 2016 © Allison J. Gong
Anthopleura sola at Pigeon Point
24 April 2016
© Allison J. Gong

Take that, charismatic megafauna!

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A little less confounded now

Posted on 2016-04-222023-01-06 by Allison J. Gong

So. Last week when I looked at my sand dollar larvae I wasn’t at all sure what to make of them. I thought that all of the offspring from one of the matings (F2xM1) were going south and didn’t know how much longer they would survive. The offspring from the other two matings seemed to be doing much better.

Fast forward a week and a half and my, how things have changed. I have some juvenile sand dollars now! And so far they are all from the F2xM1 mating, the ones that had started looking strange and that I thought might die. I’m surprised that any of the larvae metamorphosed, as my general understanding of sand dollars was that competent larvae settle among adults of their species, so that when they finish metamorphosis they would be in a suitable location to grow up. However, the animals is always right, and in this case I was happy to learn that my understanding was wrong.

This larva is almost competent. The main part of its body is almost completely filled by the juvenile rudiment (the tannish structure on the left side of the more reddish stomach) and the arms are shorter.

Almost-competent pluteus larva of Dendraster excentricus, age 30 days. 22 April 2016 © Allison J. Gong
Almost-competent pluteus larva of Dendraster excentricus, age 30 days.
22 April 2016
© Allison J. Gong

And here is a video of a trio of competent larvae.

Their bodies are almost entirely opaque now but they are unquestionably pluteus larvae.

As metamorphosis begins, the tube feet in the juvenile rudiment rupture through the body wall and the animal starts sticking to a hard surface, in this case a glass slide. For a while the animal is suspended between the larval and juvenile forms, in a state I call a larvenile. Hopefully the time spent in the larvenile stage is short, as to be neither larva nor juvenile is a bad thing. I’ve seen both sea urchins and sea stars get stuck in the larvenile stage, and they all died.

Larveniles are strange things. See for yourself.

In this video the right side of the animal (not the anatomical right but the right side of the image as it is presented on the screen) is the juvenile, and the left side is the larva. The larva half still has its fenestrated arm rods, which will eventually be dropped and left behind. It also retains for the time being the ciliated band which it used both to swim and to capture food. Another weird feature of the larvenile is the transition between the bilateral symmetry of the larva and the pentaradial symmetry of the juvenile. The bilateral symmetry has been more or less obliterated by the process of metamorphosis, but there isn’t enough of the juvenile to have complete pentaradial symmetry yet.

And, finally, metamorphosis is complete and a little sand dollar walks around on tube feet.

Yesterday this animal was a larva, and today it’s a juvenile. The sea urchins do the same thing. But these sand dollars have done everything faster than the urchins, and that includes development immediately after metamorphosis. You may recall that the purple urchins have only five tube feet when they metamorphose, and they struggle to coordinate them to walk. From what I can see these sand dollars have at least twice that many tube feet very shortly after metamorphosis, and they can walk much more quickly.

The tube feet themselves are different, too. Urchins’ tube feet are suckered and look like little plungers. Sand dollars’ tube feet have those pincher-looking tips (although I haven’t seen them open up and grab things yet). Adult sand dollars live partly buried in sand and don’t use their tube feet to cling to surfaces; they do use their tube feet to grab food, though.

Speaking of food, I don’t know what these juvenile sand dollars will be able to eat. Fortunately I have a while to figure out what to try feeding them, as their mouths won’t open up for at least a week (I hope). While it’s easy to observe what happens on the surface of the animal as it metamorphoses, it’s impossible to see what’s going on with the internal reorganization of the body. I do know that an entire new gut will have to be formed before the animal can eat. In the meantime it will have to survive on energy stores stashed in all that opaque part of the body.

Stay tuned!

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Surprise!

Posted on 2016-04-212023-01-06 by Allison J. Gong

Yesterday I went over to the Seymour Center to talk to the person at the front desk about arranging a field trip visit for a class I’ll be co-teaching this summer. When I walked through the exhibit hall into the office wing there were a couple of staff members coming the other way down the hall, gesticulating excitedly towards the door that leads to the garden area on the coastal bluff. My first thought was “Whale!” but when I looked out at the water I couldn’t see anything of particular interest in the water.

“No! Look on the wall!” they said.

“What? The barn swallows?” I asked. There were two swallows flying around under the patio. Why are they getting all excited about barn swallows? I asked myself. They kept pointing so I went over to the window for a closer look and saw this creature hanging on one of the light fixtures:

Little furry creature at Seymour Marine Discovery Center. 20 April 2016 © Allison J. Gong
Little furry creature at Seymour Marine Discovery Center.
20 April 2016
© Allison J. Gong

It’s a bat! A very small one, about the length of my thumb and about twice as wide due to the fur. It had chosen the light fixture for its daytime roost and was sleeping. Here’s a picture of its little face:

Bat on light fixture at the Seymour Marine Discovery Center. 20 April 2016 © Allison J. Gong
Bat on light fixture at the Seymour Marine Discovery Center.
20 April 2016
© Allison J. Gong

I know very little about the bat species in California. However, I did some poking around and now am fairly certain that this bat is in the genus Myotis, possibly M. californicus. There are many other species of Myotis, collectively referred to as mouse-eared bats because of their long ears.

Yesterday I couldn’t stick around long enough to see if the bat would fly at dusk. I think that quite often daytime roosts are temporary, so there’s no reason to expect the bat to return. Tomorrow I’ll be at the lab most of the day and will be able to see for myself.

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Confounded

Posted on 2016-04-162023-01-06 by Allison J. Gong

Remember that one batch of sand dollar larvae that were looking weird on Monday? Well, they still look weird. In fact, all of the larvae looked the same yesterday as they did on Monday, which seems strange, considering how quickly they galloped through development for the first three weeks of larval life. It’s as though they’ve entered some stasis period during which developmental progress slows way down. Or maybe I just can’t see the signs of change.

Pluteus larva of Dendraster excentricus, age 23 days. 15 April 2016 © Allison J. Gong
Pluteus larva of Dendraster excentricus, age 23 days. Mating: F2xM1. Diet: Rhodomonas only
15 April 2016
© Allison J. Gong

If I had seen these larvae for the very first time yesterday, I might not suspect that anything was strange. But having watched them twice weekly since fertilization and knowing how different they looked a week ago, my Potential Weirdness-o-Meter™ is redlining. These larvae have definitely changed in a week, and not in the way that I’m used to echinoid larvae developing. With their much shorter arms and overall stunted appearance, these guys appear to be regressing. However, they aren’t dying and they don’t really look bad. As I said on Monday, they just look . . . weird.

Remember how I said I’d split this cohort of larvae into two batches and fed them different things? At first I thought this strange appearance was due to the change in diet from a Rhodomonas/Dunaliella mixture to Rhodomonas only. The larva in the photo above was from the Rhodomonas-only jar, and perhaps its odd appearance could be explained by some deficiency in the monoculture diet. Then I continued on my rounds and looked at the larvae from the same mating that were still on the Rhodo/Dun diet.

Pluteus larva of D. excentricus, age 23 days. 15 April 2016 © Allison J. Gong
Pluteus larva of D. excentricus, age 23 days. Mating: F2xM1. Diet: Rhodomonas/Dunaliella mixture.
15 April 2016
© Allison J. Gong
Pluteus larvae of D. excentricus, age 23 days. 15 April 2016 © Allison J. Gong
Pluteus larvae of D. excentricus, age 23 days. Mating: F2xM1. Diet: Rhodomonas/Dunaliella mixture.
15 April 2016
© Allison J. Gong

All the larvae in these photos remained on the mixed diet, and they look pretty much the same as their siblings eating the monoculture diet. So I don’t think the change in diet explains the appearance of the larvae.

Okay, then. If it’s not the food that accounts for what these larvae look like, maybe it’s something about the mating itself. These larvae, from both food treatments, are all full siblings from one mother mated with one father. As full sibs they share, on average, 1/4 of their DNA with each other, which could account for the similarity in their appearances. Perhaps this “strange” look is due more to genetics than to the environment (i.e., food).

I can test this hypothesis by examining larvae from the other crosses. Rather fortuitously, as it turns out, when I spawned the adult sand dollars a little over three weeks ago now, only one male contributed enough sperm for me to use. Three females spawned usable amounts of eggs, so I set up three matings:

  • F1xM1
  • F2xM1
  • F3xM1

The female designated F2 gave the most eggs, and her offspring are the ones that I split into the Rhodo-only and Rhodo/Dun diets. Note that all of the larvae in this little experiment have the same father. This gives me the opportunity to test for maternal effects on development; in other words, having controlled for the effects of different fathers–ha! I make it sound as though I did that on purpose–I can now assume that differences (in growth rate, survivability, and successful metamorphosis if we get that far) between the different matings are at least partially due to differences in egg quality among the three mothers. Or to differing gamete compatibilities between each female and the one male.

So now let’s take a look at the larvae from other matings. We’ll start with F1xM1:

Pluteus larva of D. excentricus, age 23 days. Mating: F1xM1. Diet: Rhodomonas/Dunaliella mix. 15 April 2016 © Allison J. Gong
Pluteus larva of D. excentricus, age 23 days. Mating: F1xM1. Diet: Rhodomonas/Dunaliella mixture.
15 April 2016
© Allison J. Gong

This larva looks normal to me, or at least what I’ve come to assume is normal. And wow, that was one filthy cover slip,wasn’t it?

The offspring of the F3xM1 mating look very much the same:

Pluteus larva of D. excentricus, age 23 days. Mating: F3xM1. Diet: Rhodomonas/Dunaliella mixture. 15 April 2016 © Allison J. Gong
Pluteus larva of D. excentricus, age 23 days. Mating: F3xM1. Diet: Rhodomonas/Dunaliella mixture.
15 April 2016
© Allison J. Gong
Pluteus larvae of D. excentricus, age 23 days. Mating: F3xM1. Diet: Rhodomonas/Dunaliella mixture. 15 April 2016 © Allison J. Gong
Pluteus larvae of D. excentricus, age 23 days. Mating: F3xM1. Diet: Rhodomonas/Dunaliella mixture.
15 April 2016
© Allison J. Gong

And here’s a short video of that same pair of larvae. They look like they’re singing a duet. If I were the clever sort I’d dub in some music; alas, I’m not that clever. Does somebody want to do this for me?

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