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Category: General natural history

Rediscovery of a lost species

Posted on 2018-04-24 by Allison J. Gong

About a year and a half ago I wrote about salmonids and beavers in the Lake Tahoe-Taylor Creek region, specifically about the non-native kokanee salmon (Oncorhynchus nerka) that were introduced into the region in the 1930s and 1940s as a game fish. Since then the kokanee has displaced the only salmonid native to the Tahoe basin, the Lahontan cutthroat trout (Oncorhynchus clarkii henshawi), to the point that the latter was thought to be extinct.

Fast forward several decades, and Professor Mary Peacock of the University of Nevada, Reno, has found some long-forgotten Lahontan cutthroats in tiny streams in eastern Nevada near the Utah border. This is Professor Peacock’s story to tell, not mine, and you can read about it in this newspaper article. The article has a link to the actual scientific paper, published in an open-source avenue of the Royal Society. This truly is a resurrection story!

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A tourist in the nation’s capital – Day 4

Posted on 2018-04-082023-01-06 by Allison J. Gong

Library of Congress 

I was completely unprepared for how astoundingly beautiful the Library of Congress is. From the outside it looks like another of the many federal buildings constructed in the Classical style. The interior, though, was spectacular.

Columns, Corinthian capitals, and ceiling details inside the Library of Congress
28 March 2018
© Allison J. Gong
Ceiling and columns in the Great Hall, Library of Congress Jefferson Building
28 March 2018
© Allison J. Gong

The ceiling of the Great Hall is magnificent–take a look at this stained glass!

Ceiling of the Great Hall, Library of Congress Jefferson Building
28 March 2018
© Allison J. Gong

We joined a tour and the docent explained the significance of many of the architectural and artistic details she pointed out to us. She told us that when the building was designed in the 1890s, the intent was to portray the United States as a major player on the world stage, able to build in the Classical style as well as the Europeans did, while adding details that are distinctly American. For example, the mosaic floor of the great hall features a motif of an ear of corn, to represent a New World plant that isn’t native to Europe.

And this painting, high up on a wall, represents Sport. It features  baseball, that most American of sports! The corresponding painting on the opposite wall shows American football. And of course the athletes are naked, because that’s how the ancient Greek athletes competed. Artistic nudity, either in painting or in sculpture, was not a problem in the 1890s. There were no prudes calling for fig leaves to be placed over statues’ genitals, or for female nipples to be covered with pasties.

Painting portraying Sport, Library of Congress Jefferson Building
28 March 2018
© Allison J. Gong

Our docent told us that the building’s designers were all Americans, but that some of the actual artisans were brought over from Europe. Likewise, much of the stone came from quarries in the U.S. The marble for those columns with the fancy capitals, however, was mined near Siena, Italy. She wasn’t sure if it was Cararra marble. I think the look is right for Cararra marble, though.

There a lot going on, visually, inside this building. It’s exactly the kind of visual input that should have killed my brain right on the spot. However, because all of the elements conform to the theme of Classical Greek and Roman design, they fit together thematically. The net result is very pleasing to the eye. I would really like to return and go on a tour with a different docent, who would highlight other things for us to look at. The amount of symbolism and history in the building is fantastic. Every item and detail means something.

Angels in the high corner, Library of Congress Jefferson Building
28 March 2018
© Allison J. Gong

Our docent pointed out that there were no depictions of named women, anywhere in the Library of Congress. However, female figures were often used to portray broad themes such as wisdom, philosophy, culture, government, and the like. There is one mosaic of the Roman goddess Minerva:

Mosaic of Minerva, Library of Congress Jefferson Building
28 March 2018
© Allison J. Gong

Minerva is located at the landing on the staircase leading up to the overlook. Tour groups are allowed up to the overlook one at a time, and nobody is allowed to stop at the Minerva mosaic. The only way to photograph her is from across the room.

The overlook looks down into the Reading Room. It sounds like anybody needing to do research can obtain a library card and use the resources, including the Reading Room. As mere visitors, we were restricted to looking down from above.

Reading Room, Library of Congress Jefferson Building
28 March 2018
© Allison J. Gong

The Library of Congress holds one of three existing Gutenberg Bibles printed on vellum; the other two are in Europe, housed in Paris and London.

Gutenberg Bible, Library of Congress Jefferson Building
28 March 2018
© Allison J. Gong

The docent described how Gutenberg had to set, by hand, every single letter on each page he printed, and that he needed a way to organize all of the letters so he could find them easily and use them again. He decided to put all of the capital letters on the upper levels of his shelves . . . which is why we call them ‘upper case’ letters! And the lower case letters were, of course, organized in the lower levels of the shelves. I had no idea how or from where we inherited that terminology. If Gutenberg had put all the capital letters in boxes on the floor, ‘upper case’ and ‘lower case’ would mean the exact opposite of what they do mean!

Thomas Jefferson’s library is housed in this building, as well as memorabilia from Bob Hope. It also holds much of the estates of George and Ira Gershwin, some of which is displayed in the Gershwin Room, opened as a permanent exhibit in 1998. We got to see George Gershwin’s piano! It’s a black Steinway grand, a smaller version of what you’d see in any concert hall and doesn’t look particularly special until you consider the musical genius of the man who sat at it and composed Rhapsody in Blue and An American in Paris. Not to mention Porgy and Bess. I mean, WOW!

Front page from the original score to Gershwin’s An American in Paris, Library of Congress Jefferson Building
28 March 2018
© Allison J. Gong

It doesn’t get more American than that, does it?

Smithsonian National Museum of Natural History 

Finally, on the afternoon of our last day, we got to visit the NMNH. My friend, Dr. Chris Mah, works in the Invertebrate Zoology department of the NMNH. We arranged to meet him outside the staff entrance so we could bypass the ginormous line, then wandered the hall for a couple of hours before meeting up with him again for a tour of the behind-the-scenes stuff.

To be honest, while I love exploring any natural history museum, this one was too crowded for me to relax and enjoy. Again, it was because I was there during spring break, and all of the museums were especially packed with visitors. We had time to wander through the Ocean Hall, the fossils, and the minerals and gems. The minerals and gems are often my favorite part of a natural history museum, because (a) I’m not a geologist, so there’s always stuff for me to learn; and (b) I love the colored minerals. I don’t covet precious gems because of their monetary value, but I do love looking at them for their brilliant colors.

I took only one good picture on the main floor of the museum–there were too many people around for me to be able to take the time to frame shots nicely and after a while I gave up. But this is the fossil skeleton of a whale ancestor. Note that this animal didn’t have just the pelvic bones that modern whales have; it had fully formed hind limbs. The most recent thinking is that Ambulocetus natans was entirely aquatic, but may have been able to walk around on the seafloor even if it never came out onto land.

Ambulocetus natans, at Smithsonian National Museum of Natural History
29 March 2018
© Allison J. Gong

The real treat for us was meeting up with Chris again at the end of the day. Chris took us through the security doors to the Invertebrate Zoology department, where the various collections are housed. This is where all the cool (and bizarre) stuff is kept. Most of the items are not going to be displayed, but are used by scientists studying particular groups of animals. Chris works at the NMNH but also travels to museums in California, Paris, and Tokyo to identify sea stars in those collections. The bowels of a museum are like the bowels of any other building–fluorescent lighting, dingy walls, old posters and whiteboards on the walls.

This was the best door sign. In recent years the federal museums have undergone reorganizations and consolidations. I don’t know why and forgot to ask Chris, but the Invertebrate Zoology department inherited the entire National Parasite Slide collection. I bet it’s a huge collection of parasites sectioned and mounted on slides.

In one of the collection rooms, sitting against the wall, was one of the most godawful objects I have ever seen.

29 March 2018
© Allison J. Gong

It’s a giant clam shell (Tridacna sp.) mounted on a silver base of mermaids. At first I thought it was a bathroom sink, but Chris said it’s a punch bowl. Apparently there’s a whole set of punch cups that go with it. The whole shebang was a gift to one of the early 20th-century presidents. Seems it might be a better item for the American History Museum, but may be they got right of first refusal and refused to accept it. Or maybe because of the clam shell the IZ department wanted it? Doubtful.

The collections are housed in movable shelves, in some order that hopefully makes sense to both the curators (people who decide what goes where) and the scientific users. Here’s a bit of the coral collection:

One drawer of the coral collection, Smithsonian National Museum of Natural History
29 March 2018
© Allison J. Gong

Items that are being actively studied or need a temporary place while their permanent home is being decided or made ready end up spread out on big tables. This is the kind of thing that I find fascinating. The detritus of working scientists is fun to examine.

MIscellaneous items, Smithsonian National Museum of Natural History
29 March 2018
© Allison J. Gong

These are freshwater bivalves:

Freshwater bivalves, Smithsonian National Museum of Natural History
29 March 2018
© Allison J. Gong
Smithsonian National Museum of Natural History
29 March 2018
© Allison J. Gong

Chris said that the museum acquires items from a variety of sources: private collections, smaller museums or schools that can no longer keep all of the material in their own collections, and donations from individuals. Some of the artifacts are quite old, and arrive in quaint containers such as these nostalgic match boxes. Other things are packaged in paper towels and plastic bags. This, of course, is for dry specimens. Wet specimens, preserved in alcohol or formalin, are stored in buckets elsewhere.

Chris showed us some specimens that were of special interest to this marine biologist from California. The first were some brittle stars, Ophiocoma aethiops, collected by Ed Ricketts! Get a load of the label on this box:

Ophiocoma aethiops, collected by Ed Ricketts, Smithsonian National Museum of Natural History
29 March 2018
© Allison J. Gong

There were four other boxes of the same animal. The date (March 20, 1940) and location (Espiritu Santo) indicate that this specimen and the several others just like it were collected during the trip that Ricketts and Steinbeck immortalized in their book Sea of Cortez. I read this book every so often, and use bits of it in lectures. I know that most of Ricketts’ collection was deposited with the Hopkins Marine Station, part of Stanford University in Pacific Grove, after his death, and it was really cool to see this set of specimens in the Smithsonian.

The other special item that Chris likes to show visitors from California is the type specimen of one of our local sea stars, Pisaster giganteus. Before the onset of sea star wasting syndrome I’d see this star occasionally in the low intertidal, and divers would see it subtidally in kelp forests. The biggest one I’d ever seen was probably about 23 cm in diameter, a bit larger than my completely outstretched hand. What the Smithsonian has in its collection, for reasons that I don’t remember, is the type specimen for this species. The type specimen is the individual (or group of individuals) that is the basis for the scientific description of a species and the species’ name. You can think of it as the ‘default’ for a species, with an important caveat. Many times a species is named based on a type specimen that turns out to be not the norm for the species, which is why we encounter scientific names that are descriptive but make no sense.

Anyway, here’s the type specimen of P. giganteus:

Dr. Chris Mah holding the type specimen of Pisaster giganteus, Smithsonian National Museum of Natural History
29 March 2018
© Allison J. Gong

The tag says that this animal, which indeed lives up to its species epithet, was collected from Tomales Bay in 1857. It’s easily three times the diameter of the conspecific stars that I’ve seen alive. And even in photos of subtidal stars, I haven’t seen a P. giganteus this big. Do they just not get this big anymore? Does it have something to do with habitat? I wouldn’t have expected to find P. giganteus in Tomales Bay, because I usually associate them with a rocky bottom in a more exposed habitat. So what’s going on with this type specimen? I don’t know, maybe nothing. This thing is remarkable for its huge size, though. Stuff like this is very cool. I always like going backstage and getting to see things that will never make it into the exhibit hall.

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Getting skunked by birds

Posted on 2018-02-242023-01-06 by Allison J. Gong

This week I took my Ecology students to the Younger Lagoon Reserve (YLR) on the UC Santa Cruz Coastal Science Campus. The YLR is one of 39 natural reserves in all of the major ecosystems throughout the state of California. The UCSC campus administers five of the reserves: Younger Lagoon, the Campus Reserve, Fort Ord Natural Reserve, Año Nuevo (operated in conjunction with the California State Park system), and the Big Creek Natural Reserve in Big Sur. The UC reserves are lands that have been set aside to use as living laboratories and outdoor classrooms, and are fantastic places to take students to learn about the natural history of California. They provide students with opportunities to gain valuable hands-on experience working in the field, through classes, internships, or volunteering.

Younger Lagoon
23 February 2018
© Allison J. Gong

The Younger Lagoon Reserve comprises about 70 acres of land, most of which was formerly brussels sprouts fields. The lagoon itself is a Y-shaped body of brackish water that receives input from run-off due to rain. It connects with the water of Monterey Bay only when there is enough freshwater flowing to break through the thick sand berm; this happens once or twice a year during the rainy season. The Lagoon lands were donated to UCSC in the 1970s. East of  the actual lagoon are about 47 acres of what are referred to as Terrace Lands, which were incorporated into the YLR in 2009. This is where, for the past three years, I’ve brought students to work on vegetation restoration. The team of reserve stewards, interns, and volunteers has a yearly goal to replant two acres every year.

Restoration of native vegetation at the Younger Lagoon Reserve
23 February 2018
© Allison J. Gong

This year, instead of getting straight to the planting, we began the morning at the bird banding station. Personnel at the YLR have been banding birds for a little over a year now, usually on Fridays and occasionally on Thursdays. The banders, or “bird nerds”, get started at about 07:30, and by the time our class arrived at 09:30 they had caught five birds. It was windy and there was no cloud cover at all, which were not very good conditions for catching birds in either the mist nets or the ground traps.

Rachel explains how a mist net catches flying songbirds
23 February 2018
© Allison J. Gong
This trap catches birds that forage on the ground
23 February 2018
© Allison J. Gong

Notice how both the mist net and the ground trap are empty? That’s the kind of luck we had with the bird banding.

The rest of the morning was very productive. After the bird banding demonstration we joined the UCSC student interns on the Terrace Lands for some planting. The method used for planting has changed since the last time I was here with students in 2016, due to a 5-year study comparing weed control methods. Herbicide was very effective, but obviously toxic to the native plants as well as the weeds. The stewards also tried laying black plastic over the fields and letting the sun bake the weeds to death. This was almost as effective as herbicide; however, the plastic can be used only a few times and then has to be thrown away to end up in the landfill. The result of the study was a compromise between effective weed control and minimal negative environmental impact. The planters now put down a layer of biodegradable paper and cover it with mulch. Holes are punched through the paper and small plants are planted in the holes. The combination of the paper and mulch seems to work pretty well. Plus, there’s no waste!

Rolling out the weed barrier
23 February 2018
© Allison J. Gong

A large group of about 25 motivated workers can accomplish quite a lot in a few hours. By lunchtime we had lain three long strips of the paper side-by-side, covered them with mulch, and repeated the process twice more, using up the entire roll of paper. The hole-punching and planting go more slowly, but we did place ~200 plants in the ground. It was a busy and productive morning, despite the lack of birds. The students said they learned a lot and had fun doing it. That’s the beauty of field trips!

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Charismatic megafauna

Posted on 2018-01-162023-01-06 by Allison J. Gong

I like to venture out of my comfort zone every once in a while, as that’s the only way to keep learning. Even though my particular area of interest is the marine invertebrates, there are a lot of other aspects of marine biology that are almost as interesting. And if I’m going to call myself a naturalist I should extend my knowledge in as many directions as I can, right? Besides, going out and learning new stuff is a lot of fun!

Shortly after the new year I went up to Año Nuevo State Park to see the northern elephant seals (Mirounga angustirostris) at their winter breeding rookery. Of course, I’ve known about the rookery ever since I came to Santa Cruz and have had friends in the Ph.D. program doing their dissertation out there, yet for whatever reason I never managed to get out there during the breeding season. The park is open all year, but while seals are on the beach for breeding the trail out to the rookery is accessible only via docent-led tour. This year I remembered to buy tickets ahead of time, to ensure that we’d be able to see the seals on a day we had time to do so.

The day we went, a Thursday, was threatening to be stormy, so we took our rain jackets just in case. We met up with our docent, a woman named Trevlyn, and hiked out to the beaches. Before we got there, though, we saw a mother bobcat (Lynx rufus) and her two kittens. This particular mom is well known to the folks at the park, who see her frequently. Because of the overcast skies, these normally crepuscular wild cats were active in the middle of the day.

Adult female bobcat (Lynx rufus) at Año Nuevo State Park
4 January 2018
© Allison J. Gong

And here is one of her kittens. There were two, but they were much shyer than their mom and hesitated to come out of the bushes.

Bobcat (Lynx rufus) kitten at Año Nuevo State Park
4 January 2018
© Allison J. Gong

Both of the kittens looked healthy, alert, and well fed. It looks like the heavy rains of the 2016-2017 season resulted in an abundance of prey–everything from insects to rodents to rabbits to birds–for carnivores, including bobcats. Given the bobcat’s variable and adaptable diet, the future looks bright for these kittens who were lucky enough to be born in a state park. They (and their prey) will not be poisoned by pesticides or herbicides or hunted by humans, although it is likely that mountain lions (Felis concolor) prowl these trails as well.

Our guide, Trevlyn, giving us the lowdown on elephant seal biology
4 January 2018
© Allison J. Gong

Before arriving at the rookery we stopped so that Trevlyn could go over some elephant seal biology and give us the rules for visiting the beaches. The rules were: (1) stay behind Trevlyn at all times; and (2) do whatever she says without question. These animals are BIG and can move surprisingly fast over short distances. We were there at the early part of the season and there were only a few hundred animals at the rookery. But later, after all the adult animals have returned to land and the pups are born, it gets very crowded and stinky.

Elephant seal biology

The northern elephant seal is a highly pelagic animal, coming to land for two purposes at different times of the year: to breed in the winter and to molt. While they are hauled out for either purpose they do not feed, and survive on blubber reserves accumulated during the months foraging at sea. The different demographic groups (pups, juveniles, adult females, and adult males) haul out at different times of year.

The breeding season begins in mid-November, with the adult males arriving first. As they are staking out beach territory the females start arriving about three weeks later. They are pregnant and usually give birth a few or several days after their arrival.

Newborn elephant seal (Mirounga angustirostris) with its mother at Año Nuevo State Park
4 January 2018
© Allison J. Gong

A female who has given birth spends all of her time resting and nursing her pup. See how the pup in the photo above is sort of skinny, with wrinkled skin? This tells us that it is only a couple of days old. As it continues to nurse that loose skin gets filled out and the pup gets nice and fat. In the meantime, its mother is fasting while she nurses, and loses a significant portion of her bodyweight.

Sometimes the juvenile males, who have not yet proven their worth against an established bull male, get a little overexcited and try to mate with a female who has just given birth. These females are not receptive because, well, they’ve just given birth and have not yet gone into estrus. Watch this female above rebuff the attention of a juvenile male. Trevlyn told us that females try to rest near the larger bull males, whose presence will keep the juvenile males in line. Oh, and those markings on the young male? Those are made with ordinary hair dye, to identify the animals being studied.

Pups nurse for 28 days, then are abruptly weaned when their mothers mate and return to the sea. At this point the pups are called weaners. Weaners can’t follow their mothers to the sea until they molt their pup fur and learn how to swim. They usually head out around early May, when they become fodder for white sharks lurking just offshore. The sharks ain’t stupid.

The spectacular showdowns between adult male seals fighting for mating rights should be starting up about now.

Adult male elephant seal (Mirounga angustirostris) on the beach at Año Nuevo State Park
4 January 2018
© Allison J. Gong

Adult males are by far the largest animals on the beach. They also have a much larger proboscis. And see that pinkish stuff on the neck? That is thickened, callused skin that forms when the animals are fighting. As two bull males charge into each other they rear back and then slam forward, trying to gouge each other’s neck with their teeth. The fights are not deadly but can become quite bloody before the loser decides to give in to the dominant male. While they aren’t fighting or mating the males are resting to conserve their energy. This early in the season there is plenty of space on the beach and things are pretty serene, although as animals continue to arrive and pups are born, the fighting and mating will begin in earnest and there will be a lot more activity.

Elephant seal rookery (Mirounga angustirostris) at Año Nuevo State Park
4 January 2018
© Allison J. Gong
Elephant seal rookery (Mirounga angustirostris) at Año Nuevo State Park
4 January 2018
© Allison J. Gong

But at least as of early January, youngsters like these yearlings can relax on the beach without having to worry about being run over by males weighing up to 2500 kg.

Yearling northern elephant seals (Mirounga angustirostris) at Año Nuevo State Park
4 January 2018
© Allison J. Gong

Año Nuevo Island lies just offshore. When northern elephant seals began to return to this part of California they established their first breeding colony on the Island. Many pinnipeds, as well as seabirds, breed on islands because they are protected from land predators. In the case of the northern elephant seal, the major land predator was the grizzly bear.

Año Nuevo Island
4 January 2018
© Allison J. Gong

Problem is, Año Nuevo Island has limited beach real estate. Elephant seals can’t climb up even short cliffs, so can come ashore only on sandy beaches. The last wild grizzly bear in California was spotted in 1924, and since then the elephant seals have began taking over the coastal beaches near the island. All told, some couple thousand elephant seals will be on the beach at Año Nuevo this winter. This is a small rookery; the rookery south at Piedras Blancas is much larger. The northern elephant seal population in California seems pretty robust, with the animals having recovered nicely after being hunted to near extinction at the end of the 19th century. In these days when all news about the environment seems to be doom and gloom, it’s nice to hear of a wildlife species doing so well.

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Disappearing puff balls

Posted on 2017-12-282023-01-06 by Allison J. Gong

The other day I was walking along Pescadero Beach about an hour north of where I live. My husband and I had gone on a short afternoon hike in Pescadero Marsh and decided to return to the car via the beach. It was a windy afternoon, making photography difficult, but I did enjoy the chance to get out, stretch my legs, and observe some nature. The ocean was quite lively, and as always it was fun watching surf scoters playing in the waves crashing on the beach. These ducks breed in freshwater lakes in northern Canada and Alaska, but spend their winters along the Pacific and Atlantic coasts of North America, where they forage on small invertebrates.

Surf scoters (Melanitta perspicillata) bobbing around in the surf at Pescadero Beach.
26 December 2017
© Allison J. Gong

High on the beach well above the high-tide line we spotted some little brown puff balls, perfectly colored to match the sand and tiny enough to disappear completely in the divots formed by the footsteps of previous beach combers. They would run along the sand and duck behind a small hillock of sand, where they would be protected from the wind and from visual predators. See how well they disappear?

Can you spot the snowy plover?
26 December 2017
© Allison J. Gong
Snowy plover (Charadrius nivosus) at Pescadero Beach
26 December 2017
© Allison J. Gong

These are the delightful snowy plovers in their winter plumage. The field guides describe them as inconspicuous, pale little birds, which they certainly are. Unlike the sanderlings and other ‘peeps’ that frequent our beaches, which gather in large flocks and run away from both waves and people, snowy plovers react to human presence by hunkering down in small depressions and relying on their cryptic coloration for protection. Snowies live in California year-round, but I see them usually in the winter and spring. They nest in the sand, laying eggs in small depressions lined with shells, pebbles, and other like debris. Both parents incubate the clutch of 3-4 speckled eggs, which hatch into speckled nestlings.

Snowy plover (Charadrius nivosus) at Pescadero Beach
26 December 2017
© Allison J. Gong

It’s this habit of nesting on sand that imperils the snowy plover. They are not as a species considered endangered, but some populations are declining. Human activities and the presence of dogs on beaches disrupt breeding birds and destroy eggs. Such tiny birds have a high metabolism and need to feed constantly. Every time they are disturbed into running away from humans they expend precious energy that they cannot spare. This is why some beaches where snowies are known to be nesting are closed to humans during the nesting season.

So if you see one of these signs on the beach, stay out of the fenced areas and keep your eyes open for tiny sand-colored puff balls. Even when the birds are not breeding they should be left alone and watched from a distance. Use your binoculars to get a close-up view of them.

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Creepy crawlies

Posted on 2017-10-312023-01-06 by Allison J. Gong

There are certain creatures that, for whatever reason, give me the creeps. I imagine everyone has them. Some people have arachnophobia, I have caterpillarphobia. While fear of some animals makes a certain amount of evolutionary sense—spiders and snakes, for example, can have deadly bites—my own personal phobia can be traced back to a traumatic childhood event involving an older cousin and a slew of very large tomato hornworms. Even typing the words decades later makes me want to rub my hands on my jeans.

But enough about caterpillars. This Halloween I want to share something that isn’t nearly as disgusting, but can still creep me out sometimes. Commonly called skeleton shrimps, caprellid amphipods are a type of small crustacean very common in certain marine habitats. They are bizarre creatures, but a close look reveals their crustacean nature. For example, they possess the jointed appendages and compound eyes that only arthropods have.

Female caprellid amphipod (Caprella sp.)
22 October 2017
© Allison J. Gong

Around here the easiest place to find caprellids is at the harbor, where they can be extremely abundant. The last time I went to the harbor to collect hydroids for my class, the caprellids were swarming all over everything. When I brought things back to the lab I had to spend an hour or so picking the caprellids off the hydroids. I don’t think they eat the ‘droids, but they gallop around and keep messing up the field of view, making observation difficult. They’re essentially just a PITA to deal with, and everything is easier after they’ve been removed.

Caprellid amphipods (Caprella sp.) at the Santa Cruz Yacht Harbor
23 June 2017
© Allison J. Gong

Caprellids are amphipods, members of a group of crustaceans called the Peracarida (I’ll come back to the significance of the name in a bit). They have the requisite two pairs of antennae that crustaceans have, and seven pairs of thoracic appendages of varying morphology. Some of these thoracic legs are claws or hooked feet that like to grab onto things. A caprellid removed from whatever it’s attached to and placed by itself in a bowl of seawater thrashes around spastically. Only when it finds something to grab does it calm down. Even then, they attach with their posterior appendages and wave around the front half of the body in what I call the caprellid dance: they extend up and forward, and sort of jerk front to back or side to side. It isn’t pretty.

A bunch of caprellids removed from their substrate and dumped into a bowl together will use each other as something to grab. This forms the sort of writhing mass that makes my skin crawl. I was nice enough to give them a piece of bryozoan colony to hang onto, but even so they ended up glomming together.

Now, back to the thing about caprellids being peracarids. The name Peracarida means “pouch shrimp” and refers to a ventral structure called a marsupium, in which females brood their young. Males don’t have a marsupium, so adult caprellids are sexually dimorphic. When carrying young, a female caprellid looks like she’s pregnant. See that caprellid in the top photo? She’s a brooding female. That’s all fine, until her marsupium itself starts writhing. This ups the creepiness factor again. Here’s that same brooding female, in live action:

Crustaceans obviously don’t get pregnant the way that mammals do, but many of them spend considerable energy caring for their young. Well, females do, at least. A female caprellid doesn’t just carry her babies around inside a pouch on her belly. Although she isn’t nourishing them from her own body in the way of mammals (each of the youngsters in the marsupium is living off energy stores provisioned in its egg), the mother does aerate the developing young by opening and closing the flaps to the marsupium. This flushes away any metabolic wastes and keeps the juveniles surrounded by clean water. As the young caprellids get bigger, they begin to crawl around inside the pouch, and eventually leave it. They don’t depart from their mother right away, though; rather they cling to her back for a while, doing the caprellid dance in place as she galumphs along herself.

Until the juveniles strike out on their own they form a small writhing mass on top of a female who can herself be part of a larger writhing mass. And the sight through the microscope of all these long skinny bodies jerking around spasmodically can indeed be very creepy. Fortunately not as creepy as caterpillars, or I wouldn’t be able to teach my class or go docking with my friend Brenna. And it’s a good thing caprellids are small, ’cause if they were any bigger. . . just, no.

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The tiniest advantage

Posted on 2017-10-132023-01-06 by Allison J. Gong

Although the world’s oceans cover approximately 70% of the Earth’s surface, most humans interact with only the narrow strip that runs up onto the land. This bit of real estate experiences terrestrial conditions on a once- or twice-daily basis. None of these abiotic factors, including drying air, the heat of the sun, and UV radiation, greatly affects any but the uppermost few meters of the ocean’s surface so most marine organisms don’t need to worry about them. Despite the apparent paradox of where they live, intertidal organisms are also entirely marine–they cannot survive prolonged exposure to in air or freshwater. So how do they manage to live here?

Some organisms have a physiological tolerance for difficult conditions. These tidepool copepods and periwinkle snails, for example, are able to survive in the highest pools in the splash zone, where salinity can be either very high (due to evaporation) or very low (due to rain or freshwater runoff), dissolved oxygen is often depleted due to high temperature, and temperature itself can be quite warm. Sculpins and other tidepool fishes cope with low oxygen levels by gulping air and/or retreating to deep corners of their home pools.

Of course, animals that can locomote have the option of moving to a more favorable location. Other creatures, living permanently attached to their chosen site, aren’t quite so lucky. Let’s take barnacles as an example.

Nauplius larva of the barnacle Elminius modestus
© Wikimedia Commons

Barnacles have two planktonic larval stages: the nauplius and the cyprid. The nauplius is the first larval stage and hatches out of the egg with three pairs of appendages. It can be distinguished from the nauplius of other crustaceans by the presence of two lateral “horns” on the anterior edge of the carapace. The nauplius’s job is to feed and accumulate energy reserves. It swims around in the plankton for several days or perhaps a couple of weeks, getting blown about by the currents and feeding on phytoplankton.

Cyprid larva of a barnacle

After sufficient time feeding in the plankton, a barnacle nauplius metamorphoses into the second larval stage, the cyprid. A cyprid is a bivalved creature, with the body enclosed between a pair of transparent shells. It has more appendages than the nauplius, and these are more differentiated. If the nauplius has done its  job well, then the cyprid also contains a number of oil droplets under its shell. These droplets are of crucial importance, because the cyprid itself does not feed. For as long as it remains in the plankton it survives on the calories stored in those droplets. The cyprid’s job is to return to the shore and find a suitable place on which to settle. Somehow, a creature about 1 mm long, being tossed about by waves crashing onto rocks, has to find a place to live and then stick to it.

Returning to the topic of the challenges that marine organisms face when they live under terrestrial conditions, let’s see how these barnacles manage. Along the northern California coast we have a handful of barnacle species living in the intertidal. In the higher mid-tidal regions at some sites, small acorn barnacles of the genera Balanus and Chthamalus may be the most abundant animals.

Mixed population of the acorn barnacles Balanus glandula and Chthamalus dalli/fissus at Davenport Landing
27 June 2017
© Allison J. Gong

However, nowhere is a particular pattern of barnacle distribution more evident than at Natural Bridges. Here, the barnacles in the high-mid intertidal are small, and concentrated in little fissures and cracks in the rock.

I think most of these small (~5 mm) barnacles are Balanus glandula:

Small acorn barnacles (Balanus glandula) at Natural Bridges
11 October 2017
© Allison J. Gong

And here’s a closer look:

Small acorn barnacles (Balanus glandula) at Natural Bridges
11 October 2017
© Allison J. Gong

If all of the rock surfaces were equally suitable habitat, the barnacles would be distributed more randomly over the entire area. Instead, they are clearly segregated to the cracks in the rock. Each of these barnacles metamorphosed from a cyprid into a juvenile exactly where it is currently located. The cyprid may be able to move around to fine-tune its final location, but once the decision has been made that X marks the spot and the cyprid has glued its anterior to the rock, the commitment is real and lifelong. The barnacle will live its entire life in that spot and eventually die there. It is quite probable that cyprids landed in those empty areas on the rock, but they didn’t survive to adulthood.

How did this distribution of adult barnacles come to be?

There is one very important biological reason for barnacles to live in close groups, and that is reproduction. They are obligate copulators, which I touched on in this post, and as such need to live in close proximity to potential mates. But today I’m thinking more about abiotic factors. In a habitat like the mid-mid rocky intertidal, desiccation is a real and daily threat. Even a minute crack or shallow depression will hold water a bit longer than an exposed flat surface, giving the creatures living there a tiny advantage in the struggle for survival. No doubt cyprid larvae can and do settle on those empty areas of the rock. However, they likely die from desiccation when the tide recedes, leaving only the cyprids that landed in one of the low areas to survive and metamorphose successfully. There are other factors as well, such as the presence of adult individuals, that make a location preferable for a home-hunting cyprid. In addition to facilitating copulation, hanging out in a cluster slows down the rate of water evaporation, giving another teensy edge to animals living at the upper limit of their thermal tolerance.

Lower in the intertidal, where terrestrial conditions are mitigated by more time immersed, barnacles and other organisms do indeed live on flat rock spaces. But at the high-mid tide level and above, macroscopic life exists mostly in areas that hang onto water the longest. Pools are refuges, of course, but so are the tiniest cracks that most of us overlook. Next time you venture into the intertidal, take time on your way down to stop and salute the barnacles for their tenacity.

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My favorite larva — the actinotroch!

Posted on 2017-09-232023-01-06 by Allison J. Gong

Five days ago I collected the phoronid worms that I wrote about earlier this week, and today I’m really glad I did. I noticed when I first looked at them under the scope that several of them were brooding eggs among the tentacles of the lophophore. My attempts to photograph this phenomenon were not entirely successful, but see that clump of white stuff in the center of the lophophore? Those are eggs! Oh, and in case you’re wondering what that tannish brown tube is, it’s a fecal pellet. Everyone poops, even worms!

Lophophore of a phoronid worm (Phonoris ijimai)
18 Septenber 2017
© Allison J. Gong

Based on species records where I found these adult worms, I think they are Phoronis ijimai, which I originally learned as Phoronis vancouverensis. The location fits and the lophophore is the right shape. Besides, there are only two genera and fewer than 15 described species of phoronids worldwide.

Two days after I first collected the worms, I was watching them feed when I noticed some tiny approximately spherical white ciliated blobs swimming around. Closer examination under the compound scope showed them to be the phoronids’ larvae–actinotrochs! Actinotrochs have been my favorite marine invertebrate larvae–and that’s saying quite a lot, given my overall infatuation with such life forms–since I first encountered them in a course in comparative invertebrate embryology at the Friday Harbor Labs when I was in graduate school.

2-day-old actinotroch larva of Phoronis ijimai
22 September 2017
© Allison J. Gong

The above is a mostly top-down view on an actinotroch, which measured about 70 µm long. They swim incredibly fast, and trying to photograph them was an exercise in futility. They are small enough to swim freely in a drop of water on a depression slide, so I tried observing them in a big drop of water under a coverslip on a flat glass slide. At first they were a bit squashed, but as soon as I gave them enough water to wiggle themselves back into shape they took off swimming out of view.

Here’s the same photo, with parts of the body labelled:

2-day-old actinotroch larva of Phoronis ijimai
22 September 2017
© Allison J. Gong

The hood indicates the anterior end of the larva and the telotroch is the band of cilia around the posterior end. The hood hangs down in front of the mouth and is very flexible. At this stage the larva possesses four tentacles, which are ciliated and will get longer as the larva grows. These are not the same as the tentacles of the adult worm’s lophophore, which will be formed from a different structure when the larva undergoes metamorphosis.

As usual, a photograph doesn’t give a very satisfactory impression of the larva’s three-dimensional structure. There’s a lot going on in this little body! The entire surface is ciliated, and this actinotroch’s gut is full of phytoplankton cells. You can see a lot more in the video, although this larva is also a little squished.

I’ve been offering a cocktail of Dunaliella tertiolecta and Isochrysis galbana to the adult phoronids, and these are the green and golden cells churning around in the larva’s gut. However, good eaten is not necessarily food digested, and the poops that I saw the larvae excrete looked a lot like the food cells themselves. Today I collected more larvae from the parents’ bowl and offered them a few drops of Rhodomonas sp., a cryptonomad with red cells. This is the food that we fed actinotrochs in my class at Friday Harbor. We didn’t have enough time then to observe their long-term success or failure, but I did note that they appeared to eat the red cells.

I don’t know if phoronids reproduce year-round. It would be a simple task to run down and collect a few every month or so and see if any worms are brooding. Now that I know where they are, it would also be a good idea to keep an eye on the size of the patch. Some species of phoronid can clone themselves, although I don’t know if P. ijimai is one of them. In any case, even allowing for the possibility of clonal division, an increase in the size of the adult population would be at least partially due to recruitment of new individuals. If recruitment happens throughout the year, it follows logically that sexual reproduction is likewise a year-round activity. Doesn’t that sound like a nifty little project?

Besides, it’s never a bad idea to spend time at the harbor!

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A different take on ‘vermiform’

Posted on 2017-09-202023-01-06 by Allison J. Gong

If I asked you to draw a worm and designate the front and back ends, you’d most likely come up with something that looks like this:

And you would be entirely correct. A worm, or any creature described as ‘vermiform’ for that matter, has an elongated, wormlike body. Some worms have actual heads with eyes and sensory tentacles, but many don’t. The great many polychaete worms that live in tubes don’t have much of a head at all: usually all you can see sticking out of the tube is a crown of tentacles used for feeding. Although even the use of the word ‘crown’ more than suggests the presence of a head, doesn’t it? After all, where else does one wear a crown?

Polychaete worms, Phragmatopoma californica, sticking their ‘heads’ out of their tubes at Natural Bridges
26 May 2016
© Allison J. Gong

Most worms, including the worm that we imagined above, are bilaterally symmetrical, with bodies elongated along the Anterior-Posterior axis. This means the head is at the anterior end and the rear is the posterior end. For animals that don’t have a prominent head, the Anterior can also be defined by the direction of locomotion. Worms crawl with their bellies against the ground, which sets up a second axis of symmetry, the Dorsal-Ventral axis. The third axis of symmetry is the Left-Right axis. These axes should sound familiar, because they apply to our own bodies, as well of those of all other vertebrates and many invertebrates. Because of our upright stance we actually walk with our ventral surface forward, which is a little confusing, but if you don’t trust me you can see for yourself by crawling around on hands and knees for a while.

Now back to our worms, hypothetical and otherwise. Consider a worm that is elongated not along its Anterior-Posterior axis, but along its Dorsal-Ventral axis. It sounds strange, but such worms do exist. They are called phoronid worms, and are classified within their own phylum, the Phoronida. They all live in tubes, and the few times I’ve seen them they have been in pretty dense aggregations. As with most tube-dwelling worms the only part of the body that you can usually see is the crown of feeding tentacles, which in these animals (as well as in the Bryozoa and Brachiopoda) is called a lophophore.

The other day I was at the harbor looking for slugs with my friend Brenna, and spotted these pale tentacles swaying in the current.

Phoronids at the Santa Cruz Yacht Harbor
18 September 2017
© Allison J. Gong

These are the lophophores of an aggregation of phoronids! I’d never seen them at the harbor before, so I was pretty excited about it. They were on the side of a floating walkway, down almost beyond the reach of my outstretched arm. The current caused the lophophores to sway continuously and I was barely able to snap some blurry photos without falling in (I couldn’t really see what I was doing and just hoped for the best) when I accidentally caught this one shot. I wanted to have at least one clear-ish shot to submit to iNaturalist. I did manage to scrape off some bits of stuff that I hoped contained intact phoronids, so I could observe them under the dissecting scope at the lab.

And these are some lovely little worms!

The tubes that these phoronids inhabit are more like burrows of slime to which the surrounding sediments adhere. The tube itself isn’t anything particularly interesting, but the bodies of the worms are beautifully transparent. One of the coolest things you can see in a living phoronid is its circulatory system. They have red blood that, like ours, contains hemoglobin, so it’s easy to see the vessels that run along the length of the worm (which is the Dorsal-Ventral axis, remember) and the two blood rings around the base of the lophophore. If you get the lighting right you can even see the vessels that extend into each tentacle of the lophophore.

Single phoronid worm extending its lophophore
18 September 2017

I was disappointed to see that none of the video clips I took really do justice to these worms. They are so pretty when I look at them through the microscope, and I wish I could capture their beauty. You may at least be able to see blood moving through the larger vessels of the body in this short video.

Seems I need to upgrade my photomicroscopy set-up. Anybody have a few thousand bucks they want to donate to the cause?

I’m keeping the phoronids for as long as I can, although I don’t know what to feed them. I had time to take just a quick look at them this morning, and they look fine. Just for kicks I offered them a little phytoplankton to see what they’d do with it and couldn’t see if they were reacting at all. Still, they are filter feeders, and if I can adjust the lighting and get a good view of those ciliated tentacles I should be able to see if they are creating a water current that is bringing food to the mouth. Friday is the next day I have time to spend with these animals that I don’t get to see very often. Maybe then I’ll have something else to report.

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The fluidity of sex

Posted on 2017-09-022023-01-06 by Allison J. Gong

We humans are accustomed to thinking of sexual function as being both fixed and segregated into bodies that we designate as either Female or Male. And while we, as a species, generally do things this way, in the larger animal kingdom sexual function doesn’t always follow these rules. Many animals are monoecious, or hermaphroditic, having both male and female sex organs in the same body. Not only that, but lots of animals change from one sex to the other. As in so many aspects of biology, the way humans do things may be thought of by us as “normal,” but it isn’t the most interesting way.

Take, for example, the slipper shell Crepidula adunca. This is a small limpet-like creature that lives on the shell of a larger snail. Around here the usual host is a turban snail, either Tegula funebralis or T. brunnea.

Slipper shell (Crepidula adunca) on its host, the turban snail Tegula brunnea, at Pigeon Point
1 May 2017
© Allison J. Gong

There are several species in the genus Crepidula, including C. fornicata, which lives on the Atlantic coast of North America. The species epithet gives an inkling of how reproduction occurs in at least these two species of the genus.

Sometimes C. adunca is found in stacks. I’ve never seen a stack taller than three individuals, but C. fornicata occurs in stacks of about six. The animal at the bottom of the stack is always the largest, and a given turban snail can play host to more than one stack at a time.

Two stacks of Crepidula adunca on the turban snail Tegula funebralis, at Pigeon Point
28 June 2017
© Allison J. Gong

As you might guess, it isn’t mere happenstance that these stacks of C. adunca occur. It turns out that this unusual living arrangement is key to both sexual function and eventual reproduction in this species. The individual on the bottom of the stack (i.e., the oldest) is always a female; those at the top of the stack (i.e., the youngest) are males. However, every stack begins with a single individual, and the default sex in newly settled C. adunca is male. An experiment conducted at Friday Harbor in Washington State1 showed the change from male to female began when the snails reached a size of 7 mm, and all animals larger than 10 mm were female. Animals that begin life as male and transform into females are described as protandrous hermaphrodites. How common is this phenomenon? Not uncommon among fishes, actually. Clownfishes in the genus Amphiprion are protandrous. Remember how in the beginning of the moving Finding Nemo, Nemo’s mom dies? Well, in real life Nemo’s dad would have become his new mom!

In any case, all C. adunca begin adult life as males. If they live long enough to reach about 7 mm in length, they might get to become females. Crepidula adunca‘s unusual living arrangement also facilitates reproduction. Unlike most limpet-like gastropods, C. adunca isn’t a broadcast spawner. Rather, it copulates, as hinted at by the species epithet of its congener C. fornicata. A female slipper shell with a male on her back has a convenient source of sperm with which to fertilize her eggs:  the male reaches into her mantle cavity and transfers sperm to her. Given the constraint of copulation, a female cannot mate until she carries at least one male on her back, and a male cannot reproduce unless he settles atop a female. Once the eggs have been fertilized, they develop within the mother’s mantle cavity until she pushes them out as little miniatures of herself.

Crepidula adunca on the turban snail Tegula brunnea, at Davenport Landing
27 May 2017
© Allison J. Gong

Cool little animals, aren’t they? They remind us not to think of ourselves as The Way Things Are Done. We have a lot to learn from creatures that are not like us, and it’s stories like these that ensure I will never lose my appreciation and love for the marine invertebrates.


1 Collin, R. 2000. Sex Change, Reproduction, and Development of Crepidula adunca and Crepidula lingulata (Gastropoda: Calyptraeidae). The Veliger 43(l):24-33.

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